Course data PoreCamp 2016

Servers

IP address: 147.188.173.136
Username: groupX (where X is 1, 2, …)

Rstudio through a web interface

• From your laptop, http://147.188.173.84:8773/ then log in using your CLIMB username and password

Data generated during PoreCamp2016

• /data/raw/gA/Ecoli_2D
• /data/raw/gB/Ecoli_1D
• /data/raw/gB/Ecoli_1D_R9.3
• /data/raw/gC/

Historical data

• /data/raw/hist/Ebola_R7
• /data/raw/hist/Ecoli_2D (subset of 20k reads)

References

• /data/ref/NC_000913 (E coli K-12 MG1655)
• /data/ref/ontlambdafull (ONT spike-in is last ~3.6kb)
• /data/ref/EcoliK12MG1655_1.fastq.gz and _2.fastq.gz (Illumina reads from the SPAdes website)

Where to save your analysis files

• $HOME